Basic Information
Locus ID:
Seu_jg2604
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 2871715 | 2892030 | + | Seu_jg2604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 125,494.59 Da | 39.19 | 89.83 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 136 | 403 | 3.34365E-91 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 464 | 760 | 2.5052E-142 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 784 | 966 | 9.5E-13 | IPR030395 |
| Pfam | PF00069 | Protein kinase domain | 132 | 399 | 3.6E-47 | IPR000719 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 471 | 754 | 4.1E-7 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 778 | 1043 | 4.19E-31 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 463 | 757 | 3.4E-39 | IPR017946 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 112 | 403 | 1.75E-77 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 88 | 205 | 8.7E-38 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 206 | 423 | 1.6E-56 | - |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 462 | 759 | 2.1E-31 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 778 | 1043 | 1.0E-28 | IPR017946 |
| SMART | SM00220 | serkin_6 | 130 | 396 | 2.2E-29 | IPR000719 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 779 | 1043 | 20.305998 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 464 | 761 | 33.3144 | IPR030395 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 130 | 407 | 36.428276 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 251 | 263 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 853 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66970.1 | SHV3-like 2. | 0 |
| RefSeq | XP_010675854.2 | glycerophosphodiester phosphodiesterase GDPDL3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7Y208 | Glycerophosphodiester phosphodiesterase GDPDL1 OS=Arabidopsis thaliana OX=3702 GN=GDPDL1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RMD9 | glycerophosphodiester phosphodiesterase OS=Spinacia oleracea OX=3562 GN=SOVF_050320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology