Basic Information
Locus ID:
Seu_jg26020
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
pentatricopeptide repeat-containing protein At5g08310
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 748429 | 751002 | - | Seu_jg26020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 96,343.34 Da | 33.80 | 100.47 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 577 | 604 | 0.38 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 539 | 565 | 0.12 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 247 | 275 | 9.0E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 420 | 446 | 5.5E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 506 | 534 | 0.36 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 676 | 725 | 1.6E-17 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 348 | 384 | 4.3E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 285 | 310 | 0.0069 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 750 | 777 | 3.5E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 316 | 345 | 0.0012 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 638 | 669 | 2.8E-12 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 466 | 494 | 2.0E-5 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 251 | 340 | 9.01E-8 | IPR011990 |
| SUPERFAMILY | SSF81901 | HCP-like | 614 | 734 | 1.86E-5 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 623 | 725 | 1.3E-36 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 84 | 239 | 1.8E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 726 | 835 | 4.4E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 240 | 311 | 8.3E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 529 | 622 | 2.6E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 319 | 409 | 3.7E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 416 | 528 | 4.4E-17 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 611 | 643 | 6.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 470 | 502 | 1.3E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 420 | 446 | 1.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 751 | 777 | 0.0011 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 316 | 348 | 2.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 247 | 277 | 2.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 351 | 384 | 8.7E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 539 | 572 | 1.9E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 644 | 677 | 5.0E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 284 | 313 | 8.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 679 | 713 | 1.2E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 714 | 747 | 2.3E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 747 | 781 | 8.769097 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 712 | 746 | 11.816339 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 467 | 501 | 10.007725 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 642 | 676 | 13.296114 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 244 | 278 | 10.281757 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 677 | 711 | 11.91499 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 348 | 382 | 12.265752 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 502 | 536 | 10.194067 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 537 | 571 | 9.04313 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 607 | 641 | 9.29524 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 313 | 347 | 9.733692 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08310.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021735448.1 | putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Chenopodium quinoa] | 0 |
| P0C8Q6 | Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08310 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803LRZ1 | Pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18500 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25362 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038576 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202760 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg14693, Sbi_jg55458, Sbi_jg55459 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26020 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012506 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78064, Sgl80568 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0021580 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30225040 |
| Apiaceae | Apium graveolens | 1 | Ag8G01964 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G010520 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712455 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1163.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G08846 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015588m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g34640.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g027900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0535 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0558 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2872 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16515 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0377900, gene-QOZ80_5BG0425020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0662080.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_010760, gene-QYE76_010824 |
| Poaceae | Oryza coarctata | 1 | Oco10G006600 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g24930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K281200 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr12G014780, Chr12G014790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G330600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG020010, gene_TRIDC7BG010020 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G161600.1.cds1, TraesCS7B02G066700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb009120_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43398 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1490, evm.TU.LG26.176 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.336 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15193 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19832 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-285 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.78 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007627 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21430 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17284 |
| Salicaceae | Populus euphratica | 1 | populus_peu13919 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613765 |
| Solanaceae | Solanum chilense | 1 | SOLCI002282700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016104 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20690_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0844 |