Basic Information
Locus ID:
Seu_jg25998
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 511498 | 528704 | + | Seu_jg25998 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 115,329.73 Da | 48.93 | 76.62 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 886 | 990 | 1.81886E-51 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 307 | 630 | 9.92423E-52 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 746 | 782 | 1.2E-7 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 326 | 610 | 2.5E-34 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 884 | 981 | 3.5E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 615 | 707 | 6.5E-7 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 294 | 610 | 7.93E-28 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 638 | 1035 | 1.58E-53 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 744 | 792 | 2.29E-11 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 540 | 612 | 9.0E-10 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 736 | 796 | 7.5E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 282 | 367 | 1.8E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 438 | 529 | 3.9E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 645 | 1039 | 7.2E-61 | IPR027417 |
| SMART | SM00184 | ring_2 | 746 | 784 | 0.0025 | IPR001841 |
| SMART | SM00487 | ultradead3 | 303 | 661 | 5.4E-25 | IPR014001 |
| SMART | SM00490 | helicmild6 | 898 | 981 | 2.0E-15 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 868 | 1034 | 13.65093 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 746 | 785 | 11.36805 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 761 | 770 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 454 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021735489.1 | helicase-like transcription factor CHR28 isoform X1 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUG1 | Helicase-like transcription factor CHR28 OS=Spinacia oleracea OX=3562 GN=SOVF_139950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology