Basic Information
Locus ID:
Seu_jg25674
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 28906044 | 28909633 | - | Seu_jg25674 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 52,140.07 Da | 44.06 | 74.31 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 117 | 432 | 1.1E-86 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 75 | 466 | 9.13E-123 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 66 | 465 | 4.4E-119 | IPR012334 |
| SMART | SM00710 | pbh1 | 246 | 272 | 240.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 296 | 316 | 2800.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 355 | 376 | 3200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 273 | 294 | 570.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 326 | 347 | 590.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 303 | 316 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021768653.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M7B2 | Polygalacturonase At1g80170 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology