Basic Information
Locus ID:
Seu_jg25610
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Replication factor A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 27978332 | 27981733 | + | Seu_jg25610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 52,372.02 Da | 38.01 | 87.15 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04480 | RPA1_DBD_A_like | 23 | 105 | 1.87134E-17 | - |
| CDD | cd04481 | RPA1_DBD_B_like | 140 | 240 | 5.06346E-11 | - |
| CDD | cd04476 | RPA1_DBD_C | 266 | 392 | 1.01609E-23 | IPR013955 |
| Pfam | PF16900 | Replication protein A OB domain | 132 | 227 | 4.0E-9 | IPR031657 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 282 | 400 | 3.2E-14 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 7 | 109 | 1.59E-10 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 263 | 394 | 1.25E-21 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 120 | 242 | 1.16E-17 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 5 | 110 | 1.9E-14 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 252 | 401 | 2.5E-28 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 114 | 245 | 1.6E-26 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 423 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05642.1 | Nucleic acid-binding, OB-fold-like protein. | 0 |
| RefSeq | XP_048503654.1 | replication factor A protein 1-like isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q10Q08 | Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4QF91 | Rep_fac-A_C domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_024594 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology