Basic Information
Locus ID:
Seu_jg25519
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 26888405 | 26892119 | + | Seu_jg25519 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 85,032.64 Da | 41.11 | 92.75 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 246 | 288 | 8.96622E-23 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 520 | 557 | 3.7E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 242 | 313 | 3.1E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 240 | 317 | 2.12E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 485 | 761 | 3.74E-45 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 626 | 772 | 1.5E-26 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 458 | 625 | 4.1E-28 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 241 | 315 | 2.4E-24 | IPR013083 |
| SMART | SM00185 | arm_5 | 681 | 721 | 11.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 600 | 640 | 50.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 559 | 599 | 4.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 641 | 680 | 0.0072 | IPR000225 |
| SMART | SM00185 | arm_5 | 518 | 558 | 0.0011 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 245 | 308 | 5.0E-29 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 652 | 693 | 10.8674 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 611 | 653 | 9.5724 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 529 | 561 | 8.9424 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 241 | 315 | 38.047123 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 774 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 466 | - | - |
| Coils | Coil | Coil | 197 | 217 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54790.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021770146.1 | U-box domain-containing protein 3-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8GWV5 | U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LF93 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8691 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19294 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000157 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121370 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31389, Sbi_jg57887 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25519 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026711 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54453, Sgl59793 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000007174, gene:ENSEOMG00000023422 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0026570, CQ.Regalona.r1.5BG0028100 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30016270 |
| Apiaceae | Apium graveolens | 1 | Ag10G00889 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G011920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720003 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.72.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G00324 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010139m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g065160.2N, BniB08g069050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1331 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1400 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6357, nbisL1-mrna-9712 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1343 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002266 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10270, Lb4G23512, Lb4G23513 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2923, evm.TU.LG02.1213, evm.TU.LG09.755 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17010 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1105 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11573 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6161 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10286 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.380 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013591 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9909 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19816 |
| Salicaceae | Populus euphratica | 3 | populus_peu15198, populus_peu15199, populus_peu32866 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610533 |
| Solanaceae | Solanum chilense | 1 | SOLCI001666900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031342 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20338_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2422 |