Basic Information
Locus ID:
Seu_jg25438
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 25178502 | 25185947 | + | Seu_jg25438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 45,555.53 Da | 43.96 | 82.62 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 18 | 50 | 7.1E-5 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 169 | 218 | 2.5E-7 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 111 | 164 | 5.2E-7 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 77 | 388 | 6.28E-32 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 62 | 5.49E-8 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 72 | 407 | 7.9E-33 | IPR015915 |
| SMART | SM00256 | fbox_2 | 21 | 61 | 0.0036 | IPR001810 |
| SMART | SM00612 | kelc_smart | 122 | 177 | 1.8E-4 | IPR006652 |
| SMART | SM00612 | kelc_smart | 179 | 232 | 0.077 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03030.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_021770215.1 | F-box/kelch-repeat protein OR23-like [Chenopodium quinoa] | 0 |
| Q0V7S6 | F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana OX=3702 GN=OR23 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RN91 | F-box/kelch-repeat protein OR23 OS=Spinacia oleracea OX=3562 GN=SOVF_047360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16177, jg37830, jg37831 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13513 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000230 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g120760 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31493, Sbi_jg57788 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25438 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019530 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54380, Sgl59713 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006726, gene:ENSEOMG00000023080 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0026010, CQ.Regalona.r1.5BG0027540 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30016630 |
| Apiaceae | Apium graveolens | 2 | Ag10G00691, Ag6G02708 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G002450, scaffold000558G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706073 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G19850, Ftri9G02652 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G03030.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028657m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03070.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g045700.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1361 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01760 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g41410 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1234 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002181 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10295, Lb2G10298 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.1563, BH07.1533, CH07.1316, CH07.1317 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0111100, gene-QOZ80_2BG0164540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0563600.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_052784, gene-QYE76_052808 |
| Poaceae | Oryza coarctata | 2 | Oco03G008750, Oco04G009120 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g21110.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G001280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G264900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG017370, gene_TRIDC6BG023050 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G129100.1, TraesCS6B02G157400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb235230_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34028 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15277 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1163, evm.TU.LG09.812 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g03360 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.973 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-11260, nbisL1-mrna-11264, nbisL1-mrna-11266 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7003 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18338 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.482 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009297 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1464 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5077 |
| Salicaceae | Populus euphratica | 2 | populus_peu15158, populus_peu32823 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610659 |
| Solanaceae | Solanum chilense | 1 | SOLCI001451600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029399 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20263_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2354 |
| Zosteraceae | Zostera marina | 1 | Zosma06g23780.v3.1 |