Basic Information
Locus ID:
Seu_jg25253
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 21649180 | 21650762 | + | Seu_jg25253 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 34,403.40 Da | 42.82 | 94.17 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 267 | 307 | 4.6E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 268 | 309 | 1.19E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 80 | 1.28E-8 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 87 | 200 | 1.48E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 112 | 207 | 1.1E-7 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 259 | 313 | 1.3E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 94 | 3.1E-5 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 265 | 307 | 11.015005 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50450.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_021847550.1 | F-box protein At1g67340-like [Spinacia oleracea] | 0 |
| Q9FK27 | F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AF49 | MYND-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology