Basic Information
Locus ID:
Seu_jg25227
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Nitric oxide synthase-interacting
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 21215920 | 21219671 | - | Seu_jg25227 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 34,003.58 Da | 42.49 | 64.21 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16513 | RING1-HC_LONFs | 214 | 256 | 2.97918E-10 | - |
| Pfam | PF15906 | Zinc-finger of nitric oxide synthase-interacting protein | 5 | 75 | 6.0E-16 | IPR031790 |
| Pfam | PF13445 | RING-type zinc-finger | 214 | 242 | 3.2E-4 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 213 | 262 | 3.03E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 77 | 2.97E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 134 | 2.1E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 194 | 277 | 6.4E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 214 | 255 | 0.0063 | IPR001841 |
| PIRSF | PIRSF023577 | NOSIP | 2 | 292 | 7.7E-97 | IPR016818 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 214 | 256 | 10.055033 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 233 | 242 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 132 | - | - |
| Coils | Coil | Coil | 75 | 95 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61620.1 | phosphoinositide binding. | 0 |
| RefSeq | XP_010681994.1 | E3 ubiquitin-protein ligase CSU1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SY88 | E3 ubiquitin-protein ligase CSU1 OS=Arabidopsis thaliana OX=3702 GN=CSU1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LL38 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20361, jg21974 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22153 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017831 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g144990 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg10292, Sbi_jg31757, Sbi_jg57545 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2364, Seu_jg25227 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023808 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl45702, Sgl45708, Sgl50463 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010049, gene:ENSEOMG00000032307 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0003620, CQ.Regalona.r1.8BG0003750 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30073850, pistato.v30293140 |
| Apiaceae | Apium graveolens | 1 | Ag7G00653 |
| Arecaceae | Cocos nucifera | 4 | COCNU_06G010490, COCNU_06G010510, COCNU_06G010730 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714744, gene-LOC120112417 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G30709 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G61620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023604m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g02960.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g059300.2N, BniB07g047480.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1494 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1663 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g06070 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0594s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g16820 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1060 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005813 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23697, Lb4G24967 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4138, BH01.4395, CH01.4705 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0243390, gene-QOZ80_3BG0284830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0386940.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068925 |
| Poaceae | Oryza coarctata | 2 | Oco05G009930, Oco06G010170 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g17170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G397800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102361, Pt_Chr0303248 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G031310, Chr12G008300 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G358900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG013800, gene_TRIDC4BG036550 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G101400.1, TraesCS4B02G203200.1 ... |
| Poaceae | Zea mays | 7 | Zm00001eb012710_P001, Zm00001eb396290_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2045, nbis-gene-3697 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1502 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1385, evm.TU.LG20.1149 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g11450 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.935 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23860 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11592 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21655 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.70 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017427 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10673 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23881 |
| Salicaceae | Populus euphratica | 2 | populus_peu10227, populus_peu18299 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621451 |
| Solanaceae | Solanum chilense | 1 | SOLCI007165700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011980 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22118_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2577 |
| Zosteraceae | Zostera marina | 1 | Zosma06g22010.v3.1 |