Basic Information
Locus ID:
Seu_jg25191
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 20557497 | 20562108 | + | Seu_jg25191 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 122,458.02 Da | 49.62 | 54.65 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 516 | 832 | 7.40036E-45 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 549 | 4.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 619 | 656 | 1.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 662 | 698 | 0.0067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 798 | 832 | 5.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 513 | 835 | 4.73E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 501 | 854 | 1.8E-64 | IPR015943 |
| SMART | SM00320 | WD40_4 | 700 | 739 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 742 | 790 | 5.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 511 | 550 | 6.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 659 | 698 | 2.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 791 | 832 | 4.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 617 | 656 | 4.5E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 624 | 665 | 15.521181 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 665 | 699 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 665 | 699 | 10.521959 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 518 | 552 | 11.312864 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 518 | 559 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 624 | 659 | 12.288313 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 809 | 832 | 9.840087 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 537 | 551 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 643 | 657 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 643 | 657 | 2.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 685 | 699 | 2.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 537 | 551 | 2.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 872 | 1028 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1028 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 906 | 920 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 930 | 994 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 880 | 897 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 207 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021854625.1 | uncharacterized protein LOC110793990 [Spinacia oleracea] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8CGL2 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g110220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology