Basic Information
Locus ID:
Seu_jg25047
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 17266549 | 17279748 | - | Seu_jg25047 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 43,006.84 Da | 52.61 | 69.00 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 346 | 372 | 2.5E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 311 | 340 | 1.3E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 307 | 340 | 1.02E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 341 | 372 | 1.38E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 264 | 301 | 1.1E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 342 | 373 | 2.1E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 305 | 341 | 5.1E-12 | - |
| SMART | SM00547 | zf_4 | 346 | 370 | 7.7E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 273 | 297 | 0.0023 | IPR001876 |
| SMART | SM00547 | zf_4 | 313 | 337 | 7.8E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 311 | 340 | 9.958232 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 344 | 373 | 9.845309 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 271 | 300 | 9.190362 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 275 | 294 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 348 | 367 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021759303.1 | zinc finger protein VAR3, chloroplastic-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9QPR9 | Zinc finger protein VAR3, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_155050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology