Basic Information
Locus ID:
Seu_jg24232
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Replication factor A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 16915648 | 16916878 | + | Seu_jg24232 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 22,365.03 Da | 29.32 | 77.67 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04476 | RPA1_DBD_C | 26 | 150 | 5.48153E-23 | IPR013955 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 40 | 158 | 5.1E-14 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 21 | 152 | 3.94E-21 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 11 | 158 | 6.2E-28 | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048503654.1 | replication factor A protein 1-like isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7J6W3C9 | Replication protein a dna-binding subunit a (Fragment) OS=Thalictrum thalictroides OX=46969 GN=FRX31_019587 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology