Basic Information
Locus ID:
Seu_jg24227
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 16843429 | 16872735 | - | Seu_jg24227 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 109,499.56 Da | 49.16 | 68.93 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00167 | SANT | 587 | 630 | 2.08111E-10 | IPR001005 |
| CDD | cd00167 | SANT | 521 | 578 | 6.50167E-5 | IPR001005 |
| CDD | cd00167 | SANT | 691 | 734 | 1.61414E-12 | IPR001005 |
| CDD | cd00167 | SANT | 639 | 683 | 1.74538E-12 | IPR001005 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 638 | 683 | 8.8E-14 | IPR017930 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 585 | 629 | 7.0E-11 | IPR017930 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 690 | 733 | 3.3E-14 | IPR017930 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 564 | 633 | 3.95E-17 | IPR009057 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 635 | 730 | 8.64E-26 | IPR009057 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 497 | 547 | 9.56E-10 | IPR009057 |
| Gene3D | G3DSA:1.10.10.60 | - | 688 | 736 | 6.9E-14 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 638 | 687 | 3.0E-18 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 520 | 582 | 2.2E-8 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 583 | 633 | 8.9E-16 | - |
| SMART | SM00717 | sant | 636 | 685 | 3.3E-14 | IPR001005 |
| SMART | SM00717 | sant | 419 | 515 | 7.5 | IPR001005 |
| SMART | SM00717 | sant | 688 | 736 | 1.7E-14 | IPR001005 |
| SMART | SM00717 | sant | 518 | 580 | 0.0021 | IPR001005 |
| SMART | SM00717 | sant | 583 | 632 | 3.6E-12 | IPR001005 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 684 | 738 | 21.193729 | IPR017930 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 521 | 578 | 7.433343 | IPR001005 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 579 | 634 | 19.986082 | IPR017930 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 638 | 683 | 15.870374 | IPR017930 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 579 | 630 | 10.371282 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 684 | 734 | 10.522243 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 632 | 683 | 10.580304 | IPR001005 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 785 | 812 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 782 | 839 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 827 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 75 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18100.2 | myb domain protein 4r1. Member of the R2R3 transcription factor gene family. | 0 |
| RefSeq | XP_048499366.1 | snRNA-activating protein complex subunit 4 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5SXM2 | snRNA-activating protein complex subunit 4 OS=Homo sapiens OX=9606 GN=SNAPC4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9D0 | Myb-like domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_096440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27001 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19968 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002632 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g078530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2569, Sbi_jg60033, Sbi_jg60034, Sbi_jg60036 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24227 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00013051, GOSA_00013052, GOSA_00015253, GOSA_00015254 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78417, Sgl80926 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006359, gene:ENSEOMG00000006551 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0012960, CQ.Regalona.r1.5BG0013480 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30150230, pistato.v30150250, pistato.v30150280 |
| Apiaceae | Apium graveolens | 2 | Ag11G03846, Ag8G00209 |
| Arecaceae | Cocos nucifera | 4 | COCNU_14G008150, COCNU_14G008160, COCNU_14G008940 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709816, gene-LOC103721351 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.610.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G23282 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G18100.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020020m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g16220.v2.2, Sp7g18220.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g046510.2N, BniB05g016770.2N, BniB05g016780.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2864 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3012 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g05240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0179s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07960 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG10.266, evm.TU.LG10.267 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00033246, Pov_00040236 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15388 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.189, BH03.245, CH03.308 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0555170, gene-QOZ80_7BG0586270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0494820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042445 |
| Poaceae | Oryza coarctata | 2 | Oco13G001170, Oco14G001220 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g04700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G030500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200610 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G001690, Chr28G000760 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G465700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG071500, gene_TRIDC5AG043630 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS3A02G503500.1, TraesCS5A02G291400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb299750_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13142, nbis-gene-51773 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5948 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2250, evm.TU.LG14.1423, evm.TU.LG20.1497 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g19370, gene.Posoc06g21230 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60404.6, evm.TU.Scaffold_11_RagTag.643 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14299, nbisL1-mrna-28887 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4298 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12333 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.5 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008890 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-947 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8390 |
| Salicaceae | Populus euphratica | 1 | populus_peu28284 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633236 |
| Solanaceae | Solanum chilense | 1 | SOLCI000443000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015451 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17963, gene_3668 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1701 |
| Zosteraceae | Zostera marina | 1 | Zosma05g32260.v3.1 |