Basic Information
Locus ID:
Seu_jg24069
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 13246149 | 13256417 | - | Seu_jg24069 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 88,922.93 Da | 49.60 | 67.09 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 86 | 123 | 1.3E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 371 | 669 | 1.8E-39 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 82 | 125 | 3.66E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 368 | 677 | 1.79E-81 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 363 | 677 | 1.6E-85 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 74 | 126 | 5.6E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 86 | 123 | 11.766868 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 371 | 672 | 47.298885 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 372 | 387 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 86 | 123 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 272 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010681055.2 | ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RNB7 | Ubiquitin carboxyl-terminal hydrolase 15 OS=Spinacia oleracea OX=3562 GN=SOVF_052480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology