Basic Information
Locus ID:
Seu_jg23957
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 10940275 | 10941219 | + | Seu_jg23957 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 34,573.94 Da | 75.53 | 83.19 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 123 | 166 | 8.6539E-17 | - |
| Pfam | PF13639 | Ring finger domain | 123 | 166 | 9.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 103 | 178 | 2.52E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 171 | 3.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 124 | 165 | 2.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 124 | 166 | 12.208971 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 314 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_010693585.2 | RING-H2 finger protein ATL2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LLW1 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology