Basic Information
Locus ID:
Seu_jg23895
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
transducin family protein WD-40 repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 9722446 | 9737138 | + | Seu_jg23895 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 79,860.13 Da | 55.72 | 80.34 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 138 | 177 | 3.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 111 | 134 | 0.048 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 111 | 707 | 6.36E-28 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 80 | 274 | 1.0E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 662 | 702 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 180 | 217 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 137 | 177 | 4.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 95 | 134 | 1.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 144 | 186 | 12.346452 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 144 | 182 | 9.651964 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 164 | 178 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 470 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43930.1 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021762594.1 | uncharacterized protein LOC110727338 [Chenopodium quinoa] | 0 |
| Q9C0C7 | Activating molecule in BECN1-regulated autophagy protein 1 OS=Homo sapiens OX=9606 GN=AMBRA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0J8B3Y5 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_005780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12791, jg27713 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4411 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021037 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg59642, Sbi_jg62989, Sbi_jg62995 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23895 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00029071 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl03175, Sgl08283 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013133, gene:ENSEOMG00000031680 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0017690, CQ.Regalona.r1.3AG0017710 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30015180, pistato.v30240170 |
| Apiaceae | Apium graveolens | 2 | Ag10G00844, Ag5G02640 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G009300 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706953, gene-LOC103711861 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.210.V1.1, AsparagusV1_07.2002.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G29649, Ftri11G15736 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G04140.2, AT5G43930.4 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003374m.g.v1.0, Thhalv10006848m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02960.v2.2, Sp2g08750.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g041790.2N, BniB02g001530.2N, BniB02g061240.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G2281, Ceq07G1212 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G2391, Cgl07G1277 |
| Cymodoceaceae | Cymodocea nodosa | 4 | gene.Cymno09g10170, gene.Cymno13g04070, gene.Cymno16g00420 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g24110 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1643 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021484, Pov_00025142 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20530, Lb3G20532 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.1461, AH07.1420, BH03.1607, BH07.1384, CH03.1764 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0109850, gene-QOZ80_2BG0163280 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0535330.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_060547 |
| Poaceae | Oryza coarctata | 3 | Oco03G007980, Oco04G008350, Oco18G001920 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g18820.2, LOC_Os09g12550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G124600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105896 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G031410, Chr10G002780, Chr11G016010, Chr14G006560 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G864200, Tel5E01G864300, Tel5E01G864400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG049440, gene_TRIDC5BG081650 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G326800.1, TraesCS5B02G539500.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb087120_P001, Zm00001eb097650_P003 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34084, nbis-gene-50997 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12602, Zma_g15318 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.1031, evm.TU.LG13.987, evm.TU.LG15.958 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g00130 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_5_RagTag.1160, evm.TU.Scaffold_9_RagTag.1067 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11631, nbisL1-mrna-21116, nbisL1-mrna-21117 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6120, nbisL1-mrna-8996 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10238, nbisL1-mrna-7269 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.422, evm.TU.utg000006l.420 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009913, Maker00013529 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1407, nbisL1-mrna-9876 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19861, nbisL1-mrna-4990 |
| Salicaceae | Populus euphratica | 4 | populus_peu26661, populus_peu26721, populus_peu26722 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132610352, gene-LOC132640307 |
| Solanaceae | Solanum chilense | 2 | SOLCI004656900, SOLCI006663000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020573, gene-LOC107031074 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13271 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0142 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38140.v3.1 |