Basic Information
Locus ID:
Seu_jg23733
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 7168522 | 7173322 | - | Seu_jg23733 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 50,451.45 Da | 44.53 | 68.72 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 22 | 107 | 8.34962E-48 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 245 | 309 | 3.30827E-24 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 245 | 312 | 2.7E-17 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 24 | 107 | 7.3E-19 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 237 | 317 | 7.99E-23 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 17 | 117 | 4.58E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 12 | 123 | 4.4E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 227 | 323 | 8.7E-23 | IPR036910 |
| SMART | SM01014 | ARID_2 | 17 | 107 | 3.6E-28 | - |
| SMART | SM00398 | hmgende2 | 244 | 313 | 7.2E-21 | IPR009071 |
| SMART | SM00501 | bright_3 | 21 | 112 | 2.0E-24 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 245 | 312 | 16.249048 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 20 | 111 | 25.311193 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 155 | - | - |
| Coils | Coil | Coil | 457 | 460 | - | - |
| Coils | Coil | Coil | 294 | 314 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021745861.1 | high mobility group B protein 15-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LZC3 | High mobility group B protein 15-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology