Basic Information
Locus ID:
Seu_jg23732
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 7157150 | 7158771 | - | Seu_jg23732 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 17,180.58 Da | 45.18 | 78.52 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 4 | 143 | 7.90136E-45 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 5 | 142 | 1.3E-38 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 3 | 148 | 4.72E-47 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 149 | 9.8E-49 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 148 | 2.7E-47 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | 40.285179 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27960.1 | ubiquitin conjugating enzyme 9. ubiquitin conjugating enzyme | 0 |
| RefSeq | XP_021749151.1 | ubiquitin-conjugating enzyme E2 28-like [Chenopodium quinoa] | 0 |
| Q1RMX2 | Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus OX=9913 GN=UBE2D2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LZC4 | UBC core domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23732 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02848, Sgl07969 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000030517 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0025620, CQ.Regalona.r1.3BG0026540 |