Basic Information
Locus ID:
Seu_jg23662
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 6283650 | 6302325 | + | Seu_jg23662 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 82,233.44 Da | 36.20 | 101.84 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 445 | 740 | 6.4E-73 | IPR000490 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 77 | 340 | 4.1E-86 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 80 | 328 | 2.16E-39 | IPR027417 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 436 | 739 | 3.01E-65 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 434 | 744 | 6.9E-94 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 105 | 395 | 5.4E-88 | IPR027417 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 105 | 264 | 28.661112 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 274 | 345 | 16.861776 | IPR020587 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 660 | 673 | - | IPR000490 |
| PRINTS | PR00142 | RecA protein signature | 235 | 264 | 1.3E-54 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 283 | 311 | 1.3E-54 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 316 | 345 | 1.3E-54 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 197 | 226 | 1.3E-54 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 163 | 192 | 1.3E-54 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_010672926.2 | DNA repair protein recA homolog 2, mitochondrial isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J4QNL7 | glucan endo-1,3-beta-D-glucosidase OS=Castanea mollissima OX=60419 GN=CMV_023946 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology