Basic Information
Locus ID:
Seu_jg23587
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
F-box family protein-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 5346519 | 5348305 | + | Seu_jg23587 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 52,192.70 Da | 40.53 | 86.95 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 57 | 94 | 3.7E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 57 | 86 | 2.75E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 51 | 87 | 9.4E-7 | - |
| SMART | SM00256 | fbox_2 | 56 | 94 | 0.0027 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49610.1 | F-box family protein. | 0 |
| RefSeq | XP_048499647.1 | uncharacterized protein LOC125497076 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803NDV6 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 4 | Ah025728, Ah025731, Ah025734, Ah025748 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg59328, Sbi_jg59330, Sbi_jg59331, Sbi_jg59332 ... |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg13336, Seu_jg23585, Seu_jg23587, Seu_jg23591 ... |
| Amaranthaceae | Suaeda glauca | 1 | Sgl66969 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5BG0019180, CQ.Regalona.r1.6AG0014140 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709460 |