Basic Information
Locus ID:
Seu_jg23520
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 4577580 | 4588098 | + | Seu_jg23520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 16,948.99 Da | 45.51 | 66.44 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 76 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TrEMBL | A0A0K9QVT2 | Arabinogalactan peptide 13-like OS=Spinacia oleracea OX=3562 GN=SOVF_135650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1629, jg29049, jg31311, jg33268 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_4680, gene_4681 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah021701, Ah021702, Ah021704, Ah021705 |
| Amaranthaceae | Beta vulgaris | 8 | BVRB_3g061030, BVRB_3g061040, BVRB_3g061050, BVRB_3g061060 ... |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21784, Sbi_jg22037, Sbi_jg63371, Sbi_jg63374 |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg15964, Seu_jg23518, Seu_jg23520, Seu_jg23521 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23766, Sgl23767 |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.3AG0020350, CQ.Regalona.r1.3AG0020360 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30187040, pistato.v30187050 |
| Apiaceae | Apium graveolens | 9 | Ag2G01495, Ag2G01506, Ag3G01497, Ag3G01498, Ag9G02277 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G10213, Ftri10G28912, Ftri12G31925, Ftri15G30126 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-8471, nbisL1-mrna-8472, nbisL1-mrna-8724 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2445 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001165, Pov_00016835 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.1471, evm.TU.LG04.1472, evm.TU.LG05.1994 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1200, evm.TU.Scaffold_1_RagTag.1202 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18854, nbisL1-mrna-4228 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000009l.188, add.evm.TU.utg000016l.330 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00016547, Maker00016555 |
| Rhizophoraceae | Rhizophora apiculata | 5 | nbisL1-mrna-21108, nbisL1-mrna-21109, nbisL1-mrna-21110 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13394, nbisL1-mrna-5586, nbisL1-mrna-5587 |
| Salicaceae | Populus euphratica | 8 | populus_peu01849, populus_peu10994, populus_peu10996 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI003449900, SOLCI004691100, SOLCI004691200 |
| Tamaricaceae | Reaumuria soongarica | 8 | gene_12868, gene_12870, gene_6977, gene_6978, gene_6979 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1470 |