Basic Information
Locus ID:
Seu_jg23419
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 3400099 | 3407452 | - | Seu_jg23419 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 61,511.69 Da | 51.21 | 84.80 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 239 | 533 | 1.27821E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 496 | 533 | 7.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 274 | 8.8E-6 | IPR001680 |
| Pfam | PF08662 | Eukaryotic translation initiation factor eIF2A | 282 | 370 | 4.9E-5 | IPR013979 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 234 | 533 | 1.72E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 498 | 548 | 8.0E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 224 | 497 | 9.4E-54 | IPR015943 |
| SMART | SM00320 | WD40_4 | 322 | 363 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 274 | 5.8E-8 | IPR001680 |
| SMART | SM00668 | ctlh | 73 | 130 | 3.8E-7 | IPR006595 |
| SMART | SM00320 | WD40_4 | 280 | 319 | 2.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 491 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 405 | 0.59 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 534 | 7.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 445 | 6.9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 501 | 533 | 11.312864 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 275 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 40 | 72 | 8.74681 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 501 | 543 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 242 | 275 | 9.572873 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 73 | 130 | 10.821926 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 328 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 323 | 10.759232 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021722150.1 | WD repeat-containing protein 26-like [Chenopodium quinoa] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LAD9 | WD repeat-containing protein 26 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology