HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Seu_jg23361
Species & Taxonomic ID: Salicornia europaea & 206448
Genome Assembly:
Description: Ribonuclease H protein
Maps and Mapping Data
Chromosome Start End Strand ID
ptg000007l 2757065 2760394 + Seu_jg23361
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.95 37,235.70 Da 46.97 95.96 -0.26
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd06222 RNase_H_like 236 290 2.86163E-9 IPR044730
Pfam PF13456 Reverse transcriptase-like 223 291 7.4E-10 IPR002156
Gene Ontology
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_048493465.1 uncharacterized protein LOC125494012 [Beta vulgaris subsp. vulgaris] 0
TrEMBL A0A4Y1QZ99 Zinc ion-binding protein OS=Prunus dulcis OX=3755 GN=Prudu_006242 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Salicornia europaea 1 Seu_jg23361
Amaranthaceae Suaeda aralocaspica 1 GOSA_00017683
Amaranthaceae Suaeda glauca 26 Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ...
Sgl13084, Sgl15001, Sgl18295, Sgl18300, Sgl20137, Sgl25178, Sgl25320, Sgl30496, Sgl31112, Sgl34578, Sgl34701, Sgl41983, Sgl43032, Sgl46814, Sgl47853, Sgl50882, Sgl50934, Sgl80037, Sgl81065, Sgl82470
Amaranthaceae Chenopodium quinoa 1 CQ.Regalona.r1.4AG0013210
Plumbaginaceae Limonium bicolor 2 Lb3G20438, Lb4G25393
Rhizophoraceae Kandelia candel 1 add.evm.TU.utg000001l.137
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.