Basic Information
Locus ID:
Seu_jg2257
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000012l | 17012121 | 17014747 | - | Seu_jg2257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 65,268.83 Da | 44.06 | 103.42 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 53 | 92 | 4.1E-8 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 182 | 205 | 0.88 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 207 | 231 | 0.12 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 234 | 256 | 1.0 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 269 | 608 | 5.76E-32 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 47 | 89 | 1.44E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 134 | 363 | 1.96E-36 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 46 | 91 | 1.1E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 409 | 610 | 1.1E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 225 | 408 | 3.5E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 130 | 224 | 3.0E-20 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 421 | 446 | 28.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 314 | 339 | 0.001 | IPR006553 |
| SMART | SM00256 | fbox_2 | 56 | 95 | 1.1E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 553 | 581 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 130 | 155 | 100.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 501 | 526 | 0.16 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 474 | 499 | 0.0026 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 366 | 391 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 527 | 551 | 14.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 447 | 472 | 0.0064 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 340 | 365 | 0.033 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 156 | 181 | 0.071 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 234 | 259 | 1.4E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 208 | 233 | 8.4E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 182 | 207 | 5.6E-5 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_010687976.2 | EIN3-binding F-box protein 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R6T0 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_099980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology