Basic Information
Locus ID:
Seu_jg2245
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000012l | 16823018 | 16845072 | + | Seu_jg2245 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 91,045.33 Da | 48.83 | 84.76 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 648 | 706 | 6.31478E-11 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 647 | 709 | 4.2E-7 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 227 | 359 | 7.6E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 647 | 709 | 2.98E-12 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 128 | 385 | 2.79E-18 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 643 | 715 | 1.0E-9 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 131 | 391 | 9.6E-26 | IPR023214 |
| SMART | SM00577 | forpap2 | 193 | 369 | 9.6E-9 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 646 | 710 | 2.3E-7 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 645 | 711 | 11.892551 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 134 | 382 | 15.196723 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 804 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 770 | 804 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_021854600.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Spinacia oleracea] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RJ10 | protein-serine/threonine phosphatase OS=Spinacia oleracea OX=3562 GN=SOVF_067230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology