Basic Information
Locus ID:
Seu_jg22346
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000014l | 38677885 | 38687178 | + | Seu_jg22346 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 113,662.35 Da | 57.25 | 77.23 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 236 | 370 | 2.76686E-20 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 259 | 368 | 5.7E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 917 | 983 | 7.2E-5 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 139 | 396 | 4.94E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 914 | 991 | 1.06E-14 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 786 | 846 | 1.59E-6 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 910 | 993 | 4.5E-10 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 140 | 400 | 5.6E-26 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 783 | 847 | 0.022 | IPR014720 |
| SMART | SM00577 | forpap2 | 203 | 379 | 4.0E-12 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 916 | 984 | 1.2E-10 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 811 | 848 | 8.760908 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 915 | 985 | 12.15959 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 144 | 392 | 15.612799 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 719 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 744 | 766 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 697 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 987 | 1031 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010686545.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNK5 | protein-serine/threonine phosphatase OS=Spinacia oleracea OX=3562 GN=SOVF_159350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology