Basic Information
Locus ID:
Seu_jg22272
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000014l | 36183835 | 36209462 | + | Seu_jg22272 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 125,852.20 Da | 48.23 | 80.46 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 407 | 711 | 7.14613E-92 | - |
| CDD | cd18793 | SF2_C_SNF | 983 | 1090 | 4.25088E-54 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 981 | 1080 | 5.1E-16 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 427 | 789 | 3.8E-71 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 826 | 862 | 5.9E-7 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 720 | 1137 | 1.57E-58 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 823 | 869 | 2.08E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 391 | 711 | 3.04E-43 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 724 | 820 | 2.3E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 382 | 557 | 4.6E-22 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 558 | 723 | 4.0E-30 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 885 | 1137 | 9.1E-58 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 821 | 878 | 1.2E-9 | IPR013083 |
| SMART | SM00487 | ultradead3 | 403 | 690 | 7.3E-23 | IPR014001 |
| SMART | SM00490 | helicmild6 | 997 | 1080 | 1.3E-19 | IPR001650 |
| SMART | SM00184 | ring_2 | 826 | 864 | 0.0016 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 422 | 673 | 12.433027 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 974 | 1128 | 15.826928 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 826 | 865 | 10.600894 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 841 | 850 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 602 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021740504.1 | helicase-like transcription factor CHR28 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNB3 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_160060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology