Basic Information
Locus ID:
Seu_jg21471
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000014l | 16307245 | 16310291 | - | Seu_jg21471 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 44,511.21 Da | 43.52 | 75.41 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 17 | 88 | 5.6E-24 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 200 | 235 | 0.0066 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 343 | 378 | 4.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 322 | 5.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 240 | 278 | 0.0098 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 101 | 380 | 1.54E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 393 | 9.9E-127 | IPR015943 |
| SMART | SM00320 | WD40_4 | 238 | 278 | 3.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 379 | 8.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 322 | 4.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 146 | 186 | 4.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 195 | 235 | 4.2E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 202 | 244 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 153 | 195 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 346 | 380 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 289 | 324 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 289 | 324 | 11.101955 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 153 | 189 | 8.992876 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 202 | 238 | 8.676514 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 309 | 323 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 173 | 187 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 173 | 187 | 2.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 309 | 323 | 2.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 265 | 279 | 2.3E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35050.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_010690365.1 | WD-40 repeat-containing protein MSI2 [Beta vulgaris subsp. vulgaris] | 0 |
| O22469 | WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana OX=3702 GN=MSI3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J5BSR0 | CAF1C_H4-bd domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_020436 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology