Basic Information
Locus ID:
Seu_jg21459
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000014l | 16102530 | 16118318 | + | Seu_jg21459 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 202,695.59 Da | 48.55 | 83.03 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1460 | 1882 | 4.0022E-118 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1508 | 1887 | 5.2E-80 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1453 | 1880 | 1.26E-92 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 177 | 649 | 3.23E-39 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 165 | 487 | 2.2E-50 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1760 | 1885 | 1.9E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1402 | 1649 | 8.7E-45 | - |
| SMART | SM00119 | hect_3 | 1471 | 1887 | 8.0E-77 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1484 | 1887 | 55.002285 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1042 | 1056 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 958 | 1010 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1126 | 1164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1534 | 1548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1279 | 1300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1129 | 1164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 956 | 1104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1068 | 1101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1529 | 1554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1269 | 1303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 123 | - | - |
| Coils | Coil | Coil | 86 | 106 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_010690374.2 | E3 ubiquitin-protein ligase UPL3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9A0 | HECT-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_097120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology