Basic Information
Locus ID:
Seu_jg20834
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000014l | 7900846 | 7913360 | - | Seu_jg20834 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 140,682.58 Da | 40.18 | 77.45 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 693 | 825 | 5.98033E-68 | - |
| CDD | cd17920 | DEXHc_RecQ | 490 | 692 | 8.66131E-104 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 504 | 672 | 2.6E-19 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 827 | 908 | 1.1E-15 | IPR032284 |
| Pfam | PF09382 | RQC domain | 916 | 1031 | 6.9E-22 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 1075 | 1142 | 5.7E-13 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 709 | 815 | 1.1E-17 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 691 | 959 | 2.66E-58 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1071 | 1146 | 2.4E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 477 | 834 | 8.77E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 693 | 910 | 1.1E-64 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1068 | 1158 | 4.3E-19 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 911 | 1029 | 8.9E-18 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 463 | 692 | 6.5E-92 | IPR027417 |
| SMART | SM00490 | helicmild6 | 735 | 816 | 8.2E-27 | IPR001650 |
| SMART | SM00341 | hrdc7 | 1070 | 1152 | 4.2E-7 | IPR002121 |
| SMART | SM00487 | ultradead3 | 498 | 701 | 1.4E-30 | IPR014001 |
| SMART | SM00956 | RQC_2 | 918 | 1029 | 3.8E-27 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 494 | 969 | 8.9E-166 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1070 | 1152 | 17.390629 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 710 | 858 | 18.844444 | IPR001650 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 696 | 767 | 10.111444 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 510 | 685 | 20.958742 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 624 | 633 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1154 | 1177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1046 | 1068 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 160 | - | - |
| Coils | Coil | Coil | 333 | 353 | - | - |
| Coils | Coil | Coil | 361 | 381 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021844419.1 | LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like 4A [Spinacia oleracea] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R0B5 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_127980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology