Basic Information
Locus ID:
Seu_jg20833
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000014l | 7892155 | 7897792 | - | Seu_jg20833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 78,314.84 Da | 43.90 | 79.33 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 469 | 502 | 0.0021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 507 | 549 | 0.023 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 371 | 682 | 5.27E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 462 | 698 | 8.8E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 362 | 461 | 4.8E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 419 | 456 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 567 | 608 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 505 | 550 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 362 | 401 | 0.96 | IPR001680 |
| SMART | SM00320 | WD40_4 | 649 | 684 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 461 | 502 | 0.0016 | IPR001680 |
| SMART | SM00668 | ctlh | 36 | 94 | 5.0E-11 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 368 | 410 | 9.672996 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 468 | 511 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 36 | 94 | 12.479137 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 6 | 38 | 8.102732 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 285 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_021736656.1 | protein TOPLESS [Chenopodium quinoa] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4RC63 | TOPLESS OS=Castanea mollissima OX=60419 GN=CMV_008440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11580, Sbi_jg46521 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20833 |