Basic Information
Locus ID:
Seu_jg20784
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000014l | 7464709 | 7476389 | + | Seu_jg20784 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 160,485.66 Da | 39.49 | 106.04 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1186 | 1406 | 1.88739E-118 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 565 | 765 | 6.38792E-113 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 869 | 1163 | 7.79536E-95 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 252 | 539 | 1.76459E-94 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 1205 | 1353 | 7.2E-31 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 583 | 717 | 1.7E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 253 | 518 | 3.1E-24 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 871 | 1112 | 6.4E-29 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 564 | 787 | 5.52E-57 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 868 | 1173 | 1.83E-51 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1178 | 1414 | 5.7E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 241 | 550 | 8.11E-32 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1171 | 1424 | 4.0E-78 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 555 | 804 | 1.0E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 833 | 1168 | 5.7E-58 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 227 | 547 | 1.4E-47 | IPR036640 |
| SMART | SM00382 | AAA_5 | 592 | 765 | 6.2E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1214 | 1399 | 5.0E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 565 | 788 | 22.855915 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 251 | 531 | 30.950991 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1188 | 1422 | 18.267437 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 871 | 1151 | 35.54097 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 690 | 704 | - | IPR017871 |
| Coils | Coil | Coil | 412 | 432 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021859169.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology