Basic Information
Locus ID:
Seu_jg20780
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000014l | 7410778 | 7417524 | + | Seu_jg20780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 157,466.05 Da | 35.29 | 105.14 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 540 | 740 | 2.79767E-112 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 227 | 514 | 1.6239E-95 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 844 | 1138 | 1.626E-93 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1161 | 1381 | 8.76443E-121 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 226 | 493 | 7.0E-24 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 846 | 1087 | 3.1E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1180 | 1328 | 1.1E-31 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 558 | 692 | 2.4E-20 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 843 | 1145 | 1.7E-52 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 535 | 762 | 5.33E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1153 | 1389 | 1.03E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 215 | 525 | 1.44E-31 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 532 | 779 | 5.0E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 808 | 1144 | 9.9E-60 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1146 | 1399 | 5.4E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 197 | 522 | 1.9E-47 | IPR036640 |
| SMART | SM00382 | AAA_5 | 567 | 740 | 7.0E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1189 | 1374 | 1.1E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 226 | 506 | 31.909296 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 846 | 1126 | 36.037235 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 540 | 763 | 22.609152 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1163 | 1397 | 18.887682 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 665 | 679 | - | IPR017871 |
| Coils | Coil | Coil | 387 | 407 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021859169.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology