Basic Information
Locus ID:
Seu_jg2072
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RING finger domain protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000012l | 14294399 | 14298743 | + | Seu_jg2072 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 38,714.97 Da | 43.25 | 87.32 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 299 | 341 | 4.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 299 | 342 | 2.47E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 279 | 345 | 1.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 300 | 340 | 8.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 300 | 341 | 12.415513 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021714123.1 | uncharacterized protein LOC110682167 [Chenopodium quinoa] | 0 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A444ESN1 | RING-type domain-containing protein OS=Ensete ventricosum OX=4639 GN=GW17_00022915 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12137, Sbi_jg46129 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20473, Seu_jg2072 |