Basic Information
Locus ID:
Seu_jg20647
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000014l | 5695452 | 5698826 | - | Seu_jg20647 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 35,099.13 Da | 41.17 | 62.22 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 32 | 315 | 4.1E-83 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 206 | 306 | 2.31E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 201 | 319 | 2.2E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 206 | 307 | 26.04693 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 170 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_010691372.2 | auxin-responsive protein IAA27 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2R4K3I4 | Auxin-responsive protein OS=Bassia scoparia OX=83154 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology