Basic Information
Locus ID:
Seu_jg20055
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 21817373 | 21830034 | + | Seu_jg20055 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 77,332.74 Da | 49.87 | 82.66 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 26 | 226 | 2.35802E-104 | - |
| Pfam | PF16124 | RecQ zinc-binding | 346 | 406 | 9.6E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 204 | 4.7E-20 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 21 | 218 | 7.35E-40 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 225 | 424 | 8.23E-22 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 227 | 320 | 1.1E-22 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 8 | 226 | 3.5E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 322 | 424 | 1.1E-11 | IPR027417 |
| SMART | SM00487 | ultradead3 | 33 | 235 | 6.1E-32 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 26 | 322 | 9.0E-109 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 386 | 8.646633 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 219 | 24.240765 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 696 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_010666848.2 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M8N9 | ATP-dependent DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology