Basic Information
Locus ID:
Seu_jg20006
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
1-phosphatidylinositol-3-phosphate 5-kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 21124858 | 21136920 | - | Seu_jg20006 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 198,847.69 Da | 47.77 | 79.14 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17300 | PIPKc_PIKfyve | 1493 | 1756 | 8.22055E-147 | IPR044769 |
| CDD | cd03334 | Fab1_TCP | 368 | 640 | 2.03681E-133 | - |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1532 | 1698 | 1.2E-32 | IPR002498 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1699 | 1754 | 2.0E-7 | IPR002498 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 390 | 629 | 2.1E-31 | IPR002423 |
| Pfam | PF01363 | FYVE zinc finger | 30 | 98 | 2.2E-17 | IPR000306 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 28 | 99 | 4.08E-18 | IPR011011 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 434 | 606 | 1.67E-42 | IPR027409 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1470 | 1756 | 3.07E-79 | - |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 433 | 606 | 9.6E-54 | IPR027409 |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1470 | 1613 | 8.6E-36 | IPR027484 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 105 | 1.8E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.810.10 | - | 1615 | 1757 | 3.9E-42 | - |
| SMART | SM00064 | fyve_4 | 25 | 100 | 5.3E-17 | IPR000306 |
| SMART | SM00330 | PIPK_2 | 1469 | 1757 | 1.0E-123 | IPR002498 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1437 | 1756 | 57.418491 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 33 | 99 | 13.116851 | IPR017455 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1767 | 1786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1275 | 1299 | - | - |
| Coils | Coil | Coil | 1085 | 1112 | - | - |
| Coils | Coil | Coil | 341 | 361 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_010687592.2 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MFB0 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology