Basic Information
Locus ID:
Seu_jg19917
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 20073587 | 20078824 | + | Seu_jg19917 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 55,618.37 Da | 43.46 | 87.66 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 207 | 1.8E-15 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 277 | 7.1E-10 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 1.3E-6 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 320 | 378 | 1.37E-6 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 21 | 276 | 3.32E-50 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 14 | 160 | 2.7E-31 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 161 | 283 | 1.3E-24 | IPR036770 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.003 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 1.4E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 8.4E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 256 | 284 | 2100.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 0.95 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 4.5E-4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.142647 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 9.287877 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.99171 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 250 | 11.293642 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 8.905817 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 12.55587 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 207 | 11.346704 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.25033 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.118069 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 11.54089 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.13699 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_010687705.2 | probable E3 ubiquitin-protein ligase XBOS32 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6NLQ8 | E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana OX=3702 GN=XBAT32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNZ5 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_158010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology