Basic Information
Locus ID:
Seu_jg19755
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
proteinaceous RNase P 1, chloroplastic mitochondrial-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 17786045 | 17787686 | + | Seu_jg19755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 57,197.12 Da | 42.19 | 62.85 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 411 | 515 | 5.8E-36 | IPR033443 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 290 | 349 | 7.1E-18 | IPR033443 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 297 | 348 | 2.2E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 408 | 515 | 1.9E-38 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 471 | 505 | 8.988323 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 244 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_021862318.1 | proteinaceous RNase P 3-like isoform X2 [Spinacia oleracea] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RZA4 | ribonuclease P OS=Spinacia oleracea OX=3562 GN=SOVF_011940 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology