Basic Information
Locus ID:
Seu_jg19382
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
GATA transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 12222088 | 12237773 | + | Seu_jg19382 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 48,528.49 Da | 54.01 | 64.20 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00202 | ZnF_GATA | 126 | 154 | 1.3482E-12 | IPR000679 |
| Pfam | PF00320 | GATA zinc finger | 127 | 160 | 1.2E-16 | IPR000679 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 122 | 161 | 2.9E-11 | - |
| Gene3D | G3DSA:3.30.50.10 | - | 126 | 165 | 4.3E-14 | IPR013088 |
| SMART | SM00401 | GATA_3 | 121 | 182 | 4.2E-14 | IPR000679 |
| ProSiteProfiles | PS50114 | GATA-type zinc finger domain profile. | 121 | 157 | 12.597755 | IPR000679 |
| ProSitePatterns | PS00344 | GATA-type zinc finger domain. | 127 | 152 | - | IPR000679 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 114 | - | - |
| Coils | Coil | Coil | 393 | 416 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26150.1 | cytokinin-responsive gata factor 1. Encodes a member of the GATA factor family of zinc finger transcription factors. | 0 |
| RefSeq | XP_010667285.1 | uncharacterized protein LOC104884345 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZI6 | Putative GATA transcription factor 22 OS=Arabidopsis thaliana OX=3702 GN=GATA22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B6G5 | Transmembrane protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_007790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg15433, jg18060, jg25244, jg3885 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11049, gene_6776 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah015360, Ah028896 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g176690 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg25353, Sbi_jg27011, Sbi_jg33542, Sbi_jg9205 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19382, Seu_jg8243 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002924, GOSA_00011151 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl42902, Sgl47665, Sgl47694, Sgl73257, Sgl76776 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000038041, gene:ENSEOMG00000038979 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0000390, CQ.Regalona.r1.8AG0014300 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30116610, pistato.v30117030 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G001770, COCNU_14G000270 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712855, gene-LOC103720228 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2991.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G12932, Ftri4G01160 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G55160.3, AT2G19530.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011806m.g.v1.0, Thhalv10022851m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g40820.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g015650.2N, BniB03g068860.2N, BniB06g026270.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0880 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0891, Cgl06G0886 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g15510 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4588 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1232 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002927, Pov_00015229 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37511, Lb4G25471, Lb5G27462 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2117, BH02.2186, BH05.1209, CH01.2701, CH02.2340 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0021850, gene-QOZ80_1BG0071780 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0094770.1, HORVU.MOREX.r3.3HG0267510.1 |
| Poaceae | Oryza coarctata | 3 | Oco01G013160, Oco02G013320, Oco09G018420 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g39780.1, LOC_Os05g51540.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G173000, gene-BS78_09G259000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505898, Pt_Chr0603109 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr05G016980, Chr08G009930, Chr0G020340, Chr0G029970 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G745400, Tel3E01G362300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG031020, gene_TRIDC3BG035660 |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G439600.1, TraesCS1B02G474900.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb094060_P001, Zm00001eb297270_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13523, nbis-gene-21561 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10395, Zma_g27487 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.1588, evm.TU.LG19.341, evm.TU.LG22.483 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g14640 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.1355 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13012, nbisL1-mrna-27673, nbisL1-mrna-7084 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12762, nbisL1-mrna-8079, nbisL1-mrna-8080 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16898, nbisL1-mrna-8766 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000004l.74, evm.TU.utg000023l.64 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00004264, Maker00015126, Maker00018892 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-16454, nbisL1-mrna-4028, nbisL1-mrna-7409 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-17915, nbisL1-mrna-24275, nbisL1-mrna-8197 |
| Salicaceae | Populus euphratica | 2 | populus_peu02630, populus_peu11947 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603713, gene-LOC132633460 |
| Solanaceae | Solanum chilense | 1 | SOLCI005558000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007430, gene-LOC107012710 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21450_chr09_-, gene_10022 |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G1681, TC12G1176 |
| Zosteraceae | Zostera marina | 1 | Zosma01g22650.v3.1 |