Basic Information
Locus ID:
Seu_jg19381
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 12215390 | 12218388 | - | Seu_jg19381 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 41,424.17 Da | 66.15 | 69.50 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 229 | 271 | 4.11572E-22 | - |
| Pfam | PF13639 | Ring finger domain | 229 | 271 | 2.3E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 19 | 52 | 2.9E-12 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 213 | 278 | 1.5E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 277 | 3.7E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 230 | 270 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 230 | 271 | 12.371254 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010667286.1 | E3 ubiquitin-protein ligase RZF1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8DXA5 | RING-type E3 ubiquitin transferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_007800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology