Basic Information
Locus ID:
Seu_jg1932
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Belongs to the helicase family
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000012l | 12085114 | 12091880 | + | Seu_jg1932 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 134,165.56 Da | 40.22 | 83.19 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04476 | RPA1_DBD_C | 975 | 1101 | 9.16523E-24 | IPR013955 |
| CDD | cd04481 | RPA1_DBD_B_like | 849 | 949 | 3.98332E-10 | - |
| CDD | cd04480 | RPA1_DBD_A_like | 732 | 814 | 3.08059E-17 | - |
| Pfam | PF08646 | Replication factor-A C terminal domain | 991 | 1109 | 1.4E-13 | IPR013955 |
| Pfam | PF14214 | Helitron helicase-like domain at N-terminus | 1 | 74 | 5.7E-23 | IPR025476 |
| Pfam | PF16900 | Replication protein A OB domain | 841 | 936 | 4.1E-8 | IPR031657 |
| Pfam | PF05970 | PIF1-like helicase | 568 | 705 | 1.5E-31 | IPR010285 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 716 | 818 | 7.71E-10 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 829 | 951 | 1.37E-16 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 972 | 1103 | 5.48E-21 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 823 | 954 | 3.8E-25 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 714 | 819 | 1.7E-13 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 961 | 1110 | 1.1E-27 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1133 | 1172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1113 | 1132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1172 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05642.1 | Nucleic acid-binding, OB-fold-like protein. | 0 |
| RefSeq | XP_021860558.1 | uncharacterized protein LOC110799587 [Spinacia oleracea] | 0 |
| Q10Q08 | Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P6V8K9 | ATP-dependent DNA helicase OS=Coffea arabica OX=13443 GN=LOC113718235 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology