Basic Information
Locus ID:
Seu_jg19151
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 8590775 | 8600884 | - | Seu_jg19151 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 125,491.72 Da | 42.45 | 78.80 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 467 | 501 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 929 | 963 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 991 | 1126 | 2.82E-9 | IPR011044 |
| SUPERFAMILY | SSF117289 | Nucleoporin domain | 335 | 455 | 2.07E-6 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 425 | 1058 | 1.72E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 319 | 524 | 2.2E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 525 | 700 | 5.7E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 786 | 1116 | 2.4E-30 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 9.8E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 841 | 878 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 881 | 921 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 924 | 963 | 7.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 460 | 501 | 7.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 354 | 393 | 3.7 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.6E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 504 | 545 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1015 | 1056 | 7.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 550 | 591 | 53.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 454 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 594 | 634 | 6.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 931 | 972 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 931 | 965 | 10.205597 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.674217 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 467 | 510 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.608736 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1140 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_010687939.1 | topless-related protein 4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LH73 | Topless-related protein 4-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology