Basic Information
Locus ID:
Seu_jg19132
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 8309357 | 8318359 | + | Seu_jg19132 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 55,962.48 Da | 40.11 | 82.91 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02298 | Plastocyanin-like domain | 410 | 477 | 2.6E-11 | IPR003245 |
| Pfam | PF07734 | F-box associated | 247 | 345 | 4.0E-7 | IPR006527 |
| Pfam | PF00646 | F-box domain | 23 | 61 | 5.8E-6 | IPR001810 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 409 | 480 | 5.17E-11 | IPR008972 |
| SUPERFAMILY | SSF81383 | F-box domain | 20 | 79 | 7.59E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 72 | 2.9E-6 | - |
| Gene3D | G3DSA:2.60.40.420 | - | 406 | 483 | 3.6E-13 | IPR008972 |
| SMART | SM00256 | fbox_2 | 20 | 61 | 7.3E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 141 | 344 | 1.0E-20 | IPR017451 |
| ProSiteProfiles | PS51485 | Phytocyanin domain profile. | 403 | 485 | 13.299375 | IPR003245 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16210.1 | F-box family protein. | 0 |
| RefSeq | XP_021865347.1 | F-box/kelch-repeat protein At3g23880-like [Spinacia oleracea] | 0 |
| Q9LU24 | Putative F-box protein At3g16210 OS=Arabidopsis thaliana OX=3702 GN=At3g16210 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0K9RTN5 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_029950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026024 |
| Amaranthaceae | Salicornia bigelovii | 32 | Sbi_jg12102, Sbi_jg12547, Sbi_jg12774, Sbi_jg12776 ... |
| Amaranthaceae | Salicornia europaea | 24 | Seu_jg10045, Seu_jg10048, Seu_jg10051, Seu_jg10052 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018958 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl34095 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0016320 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1767, evm.TU.LG20.131 |