halophFGD

Basic Information

Locus ID: Seu_jg19051

Species & Taxonomic ID: Salicornia europaea & 206448

Genome Assembly:

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000008l	6595739	6600389	-	Seu_jg19051

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.71	20,997.93 Da	42.67	87.57	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	14	175	1.19E-13	IPR036322
Gene3D	G3DSA:2.130.10.10	-	9	184	2.6E-15	IPR015943
SMART	SM00320	WD40_4	37	80	9.6E-4	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	44	89	9.773251	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14552 (NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17))

Pathway:

ko03008 (Ribosome biogenesis in eukaryotes) map03008 (Ribosome biogenesis in eukaryotes)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G18900.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_021747360.1	WD repeat-containing protein 75-like [Chenopodium quinoa]
TrEMBL	A0A803N8N2	WD_REPEATS_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg20922
Amaranthaceae	Salicornia europaea	1	Seu_jg19051