Basic Information
Locus ID:
Seu_jg18932
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 4379948 | 4382353 | - | Seu_jg18932 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 40,472.16 Da | 30.15 | 75.28 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 32 | 356 | 6.2E-71 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 259 | 327 | 9.47E-7 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 30 | 367 | 4.11E-58 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 258 | 326 | 8.1E-87 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 44 | 358 | 8.1E-87 | - |
| SMART | SM00636 | 2g34 | 28 | 356 | 1.2E-70 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 28 | 371 | 59.646713 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 131 | 139 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_010688359.1 | class V chitinase [Beta vulgaris subsp. vulgaris] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R3W0 | GH18 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_109800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology