Basic Information
Locus ID:
Seu_jg18834
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 1926172 | 1939268 | + | Seu_jg18834 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 68,621.89 Da | 44.54 | 69.00 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 340 | 618 | 7.77547E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 583 | 617 | 0.025 | IPR001680 |
| Pfam | PF08513 | LisH | 18 | 37 | 2.2E-5 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 337 | 368 | 3.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 503 | 534 | 0.0065 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 377 | 410 | 6.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 417 | 454 | 0.076 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 332 | 617 | 1.3E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 462 | 618 | 2.2E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 284 | 461 | 4.0E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 580 | 618 | 4.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 454 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 371 | 410 | 2.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 457 | 493 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 496 | 534 | 1.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 577 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 368 | 8.0E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 587 | 618 | 10.917412 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 336 | 371 | 8.966513 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 378 | 410 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 421 | 463 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 336 | 377 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 8.787457 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 378 | 410 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 421 | 456 | 9.335602 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 587 | 618 | 11.477578 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 441 | 455 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 192 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_019106660.1 | transcriptional corepressor LEUNIG isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RWK8 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_026770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology