Basic Information
Locus ID:
Seu_jg18781
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 714247 | 717979 | - | Seu_jg18781 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 46,355.43 Da | 66.69 | 61.01 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 28 | 78 | 3.77965E-23 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 30 | 76 | 4.6E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 23 | 89 | 4.86E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 90 | 2.2E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 30 | 76 | 9.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 30 | 77 | 12.076194 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 45 | 54 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 256 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_010686502.1 | E3 ubiquitin-protein ligase RMA1H1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QHU6 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_182800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology