Basic Information
Locus ID:
Seu_jg18609
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 51730838 | 51732268 | - | Seu_jg18609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 55,096.53 Da | 56.32 | 78.34 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 2 | 39 | 5.1E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 67 | 3.14E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 60 | 1.4E-7 | - |
| SMART | SM00256 | fbox_2 | 3 | 42 | 1.8E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 46 | 10.822189 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17270.1 | F-box family protein. | 0 |
| RefSeq | XP_048501650.1 | uncharacterized protein LOC104884905 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LUU4 | Putative F-box protein At3g17270 OS=Arabidopsis thaliana OX=3702 GN=At3g17270 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0J8B1Y0 | FBA_1 domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_013040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25372 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah001202, Ah001206, Ah022052 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg29762, Sbi_jg29763, Sbi_jg29764, Sbi_jg30203 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg14445, Seu_jg14446, Seu_jg14451, Seu_jg18609 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014214 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl13216, Sgl18431 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000052662 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0016190, CQ.Regalona.r1.6BG0017350 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG26.203 |