Basic Information
Locus ID:
Seu_jg18286
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 47958382 | 47959080 | + | Seu_jg18286 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 24,986.38 Da | 34.45 | 106.38 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 1 | 230 | 1.43854E-72 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 3 | 201 | 2.3E-45 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 2 | 210 | 2.18E-66 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 1 | 232 | 2.6E-77 | IPR008949 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 150 | 162 | - | IPR033749 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_021847844.1 | geranylgeranyl pyrophosphate synthase, chloroplastic-like [Spinacia oleracea] | 0 |
| Q94ID7 | Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=3981 GN=GGPS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QPW6 | Geranylgeranyl pyrophosphate synthase OS=Spinacia oleracea OX=3562 GN=SOVF_154800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology